YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE40186
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVVLYAPSV ALSPVLQINK WYLVLIFGCT TTLYTCLGGL KAVVWTDSLQ AVIMYTGVFT  60
   61 LIYKGLSHPR VGGLERVLSI AWDSGRISEL GRMDWRIDQY NSLWINLFSG TIVWLASFGV 120
  121 NQLAIQRYAS LPSLKVAQSI IIYTLAPFTV LCSIVAFVGF IALAYFYNCN PLETGEVKES 180
  181 DHITISFARD ILQPTPGLFG LYVSCIMSAT LSTLSSGMNS MAAAIYEDFL KNSLDGKITD 240
  241 TGATRLNKII VLICGLSSTG LAFLAEVLGG SLRICISVMG AMSGPMVAIF VLALFFPKSG 300
  301 SKSCLISFFL SNLFCLIICI ANYIQDPYHD LFLPTNTTLE GCNGNSNFTI RMMPTYDAHY 360
  361 GNPDTLYISR ISTYSYAGVG FVLMIIIGWI ASLFEESDHK VEKIRHLTFS GRNEPWPDTH 420
  421 HEFDHFLKEI K

Type	Start	End	Confidence
Cytoplasmic	1	20	0.62
Transmembrane Helix	21	45	0.85
Non-Cytoplasmic	46	102	0.78
Transmembrane Helix	103	125	0.87
Cytoplasmic	126	140	0.88
Transmembrane Helix	141	164	0.92
Non-Cytoplasmic	165	197	0.90
Transmembrane Helix	198	223	0.76
Cytoplasmic	224	245	0.92
Transmembrane Helix	246	265	0.92
Non-Cytoplasmic	266	273	0.68
Transmembrane Helix	274	296	0.93
Cytoplasmic	297	303	0.92
Transmembrane Helix	304	324	0.96
Non-Cytoplasmic	325	372	0.96
Transmembrane Helix	373	393	0.93
Cytoplasmic	394	431	0.97