YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE39964
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLHLFLRVL IFQTSPIFKF QLSIVAVKLI ILFMKLMPPI DNNNDEIPCS KTYSAEEIDQ  60
   61 FATRSFFKSV NNFMRILVLS EPRKGFIRFL IKEIKKTENT NTSLLFMIND DAELEMKPSC 120
  121 QIYLYSTHDT NHCIMNKLRR WIMLGVQGAL LSNILAPIHI SKIIIGTTPP VPIHDIRNIL 180
  181 FSKLDIRDRV IPTMEAVKRI SPTKSLDRTF LWFQGLNGLD YSRAKKKAGH YQHLKKILYK 240
  241 KWESENNGKW IKRKSNQVDK FWIEVI

Type	Start	End	Confidence
Cytoplasmic	1	16	0.40
Transmembrane Helix	17	34	0.48
Non-Cytoplasmic	35	266	0.69