YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALB31_ARATH
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTISLKPT HLILSSFSTG KVLQFRRSRF SHTPSSSSSR YRTLVAQLGF RPDSFDFIKD  60
   61 HAENLLYTIA DAAVSSSETF ESVAGTTTKT TQSNDWFSGI ANYMETILKV LKDGLSTVHV 120
  121 PYSYGFAIIL LTVLVKAATF PLTKKQVESA MAMKSLTPQI KAIQERYAGD QEKIQLETAR 180
  181 LYKLAGINPL AGCLPTLATI PVWIGLYRAL SNVADEGLLT EGFFWIPSLA GPTTVAARQN 240
  241 GSGISWLFPF IEGHPPLGWP DTLAYLVLPL LLVFSQYLSI QIMQSSQSND PAMKSSQAVT 300
  301 KLLPLMIGYF ALSVPSGLSL YWLTNNILST AQQVWLQKYG GAKNPVEKFT NLVTKEDKTQ 360
  361 QIEKSFSEPL VQKSVSELKI PREKGGEKVT PECPKPGERF RLLKEQEAKR RREKEERQKA 420
  421 EAALSNQNTD KAHEQDEKSD TAIVAEDDKK TELSAVDETS DGTVAVNGKP SIQKDETTNG 480
  481 TFGIGHDTEQ QHSHETEKR

Type	Start	End	Confidence
Cytoplasmic	1	119	0.61
Transmembrane Helix	120	140	0.51
Non-Cytoplasmic	141	183	0.47
Transmembrane Helix	184	207	0.80
Cytoplasmic	208	217	0.44
Transmembrane Helix	218	237	0.49
Non-Cytoplasmic	238	261	0.79
Transmembrane Helix	262	280	0.92
Cytoplasmic	281	301	0.82
Transmembrane Helix	302	323	0.92
Non-Cytoplasmic	324	499	0.94