YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|139948948, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERNNTTQTL GECEHTLETS AVLDNCTDAG SGNLSLRCWL HLLTKESSST LQGDGSSLAV  60
   61 RVMIALIYSV VCALGLVGNS LALYLLHSRY RHKQSSINCF VMGLALTDLQ FVLTLPFWAV 120
  121 DTALDFRWPF GKVMCKIISS VTTMNMYASV FFLTAMSVAR YYSIVSSLKM HSRRAAAAAA 180
  181 KWISLGIWVV SLIATLPHAI YSTIAQVATD EELCLVRFPE TGSWDPQLLL GLYQLQKVLL 240
  241 GFLIPLVVIT VCYLLLLRIV LSRRISGVAG SETEQGRHKR RSKVTKSVVV VVLSFFLCWL 300
  301 PNQALTLWGV LIKFDLVPFS KAFYNAQAYA FPLTVCLAHT NSCLNPVLYC LIRREFRAGL 360
  361 KELLLRATPS YRSLARLLPR KAKVAEAPPV LVLVQMDV

Type	Start	End	Confidence
Non-Cytoplasmic	1	63	0.94
Transmembrane Helix	64	86	0.91
Cytoplasmic	87	96	0.90
Transmembrane Helix	97	120	0.90
Non-Cytoplasmic	121	142	0.87
Transmembrane Helix	143	164	0.84
Cytoplasmic	165	178	0.91
Transmembrane Helix	179	200	0.89
Non-Cytoplasmic	201	237	0.94
Transmembrane Helix	238	257	0.95
Cytoplasmic	258	286	0.88
Transmembrane Helix	287	307	0.91
Non-Cytoplasmic	308	327	0.88
Transmembrane Helix	328	351	0.86
Cytoplasmic	352	398	0.93