YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94734026, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.70
Transmembrane Helix	20	39	0.81
Non-Cytoplasmic	40	46	0.55
Transmembrane Helix	47	67	0.91
Cytoplasmic	68	102	0.59
Transmembrane Helix	103	121	0.89
Non-Cytoplasmic	122	183	0.92
Transmembrane Helix	184	204	0.93
Cytoplasmic	205	212	0.89
Transmembrane Helix	213	235	0.85
Non-Cytoplasmic	236	265	0.84
Transmembrane Helix	266	286	0.91
Cytoplasmic	287	294	0.93
Transmembrane Helix	295	318	0.89
Non-Cytoplasmic	319	348	0.86
Transmembrane Helix	349	368	0.85
Cytoplasmic	369	397	0.88
Transmembrane Helix	398	420	0.87
Non-Cytoplasmic	421	429	0.86
Transmembrane Helix	430	453	0.89
Cytoplasmic	454	473	0.91
Transmembrane Helix	474	493	0.95
Non-Cytoplasmic	494	510	0.91
Transmembrane Helix	511	534	0.88
Cytoplasmic	535	577	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTIKGQTEE RGFWGRKAEF LLAVAGNVVG VGNVWRFPYL CYRNGGGVFL IPYLVFVMTC  60
   61 GVPLFLLETV MGQFTHEGGI TCWHLLCPLA QGVGYAGQLI ELYSCMYFTI ILAWALFYLI 120
  121 FSFSSQLPWA SCDNIWNTDN CVNLAAGNLT FNRTTQINST SAATEFWERR VLSLSGGIEE 180
  181 IGKINWEIAL CLFVMWIICY FCIWKGVKST GKVVYFTATF PYVMLLVLLI RGLTLPGALQ 240
  241 GVVFYLYPEP AHLADPQVWM EAGTQVFFSY SLCSGILIAL GSYNQYSNNC YRDSFWLCLL 300
  301 NSGTSFVAGF AVFSVLGFMA HVQGVPVEEV AESGPGLAFI AYPQAVAMMP FPQLWAVCFF 360
  361 IMIILLGLDS QFVAMECVVT SVTDLFPEVL RRAGRRELFV LLLCLTCFFG QLIMVTEGGM 420
  421 YVFQLFDNYA SNGACFLFLS VFESLTIGWI FGAEKMFDII KDMTESRPNY WFMLCWKYLT 480
  481 PLVSLTSFVY SMVRYTPLTY NRWYVYPDWA HVLGWLLALS SILLVPGWAL GQMCTGKGSL 540
  541 KQRWGHLCSP DTNLMLSSIQ IQEQTAEMED LVRSSTI