YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|161611488, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.88
Transmembrane Helix	20	39	0.89
Non-Cytoplasmic	40	47	0.77
Transmembrane Helix	48	67	0.95
Cytoplasmic	68	98	0.87
Transmembrane Helix	99	121	0.88
Non-Cytoplasmic	122	183	0.97
Transmembrane Helix	184	204	0.94
Cytoplasmic	205	212	0.89
Transmembrane Helix	213	235	0.86
Non-Cytoplasmic	236	265	0.84
Transmembrane Helix	266	284	0.94
Cytoplasmic	285	294	0.84
Transmembrane Helix	295	317	0.91
Non-Cytoplasmic	318	350	0.89
Transmembrane Helix	351	373	0.82
Cytoplasmic	374	397	0.90
Transmembrane Helix	398	420	0.87
Non-Cytoplasmic	421	429	0.82
Transmembrane Helix	430	453	0.89
Cytoplasmic	454	473	0.92
Transmembrane Helix	474	495	0.93
Non-Cytoplasmic	496	510	0.91
Transmembrane Helix	511	534	0.89
Cytoplasmic	535	586	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERINGEIEE RGYWGSKMEF LLAVAGNVVG LGNVWRFPYL CYKYGGGAFL IPYLVFVVTC  60
   61 GVPLFLLEMA MGQYTQQGGV TCWHRLCPLA EGIGYGGQLI LLYSCMYYIV ILAWALFYLI 120
  121 FSFKSQLPWA TCDNTWNTDD CINLVTKNLT INRTSLINST PAATEFWERR VLSLSGGIED 180
  181 IGKINWEILL CLIAMWIICY FCVWKGVKST GKVVYFTATF PYVMLLVLLI RGLTLPGALQ 240
  241 GVVFYLYPEP ARLADPQVWL EAGTQILFSY SVSVGSITVL ASYNKYHNNC YRDCLGLCLL 300
  301 NSVTSFVAGF AVFTVLGFMA QEQGVPIEEV AESGPGLAFI AYPQAVAMMP FPQLWAVCFF 360
  361 IMIILLGLDT QFVSMEAVVT SVMDMFPVVL RREGRREILL LFFCLTCFFG QFIMVTEGGM 420
  421 YVFQLFDYYA CNGTCLLFLS VFESLTMGWI FGADRLFDII EDMTKSRPNY IFMLCWKYLT 480
  481 PLVSLVCFVC SMVEYQPLTF NRWYVFPDWA YVLGWLLALS SIVLVPGWAL GRLCSEKGSL 540
  541 KQRWRRLCSA DKDLPLTCKQ RAQLKETAFM TEMEDLVRAS TEQHEI