YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94733673
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYSFMGGGLF CAIVGNILIV VSTATDYWMQ YRLSGSYAHQ GLWRYCMANK CYMQTASIGA  60
   61 SKYPLSHKMA SEITGAVLWF VQAYWNATRA FMILSGMACF AGIMAGILSF AHFSAFERFS 120
  121 RSFAAGIMFF ISTFFVLLAM AIYTGVTLSF LGKRFGDWRF SWSYILGWVA MLMTFFAGIF 180
  181 YMCAHRMYES RRVVGSR

Type	Start	End	Confidence
Cytoplasmic	1	6	0.70
Transmembrane Helix	7	29	0.89
Non-Cytoplasmic	30	89	0.76
Transmembrane Helix	90	113	0.90
Cytoplasmic	114	122	0.85
Transmembrane Helix	123	145	0.90
Non-Cytoplasmic	146	163	0.84
Transmembrane Helix	164	184	0.95
Cytoplasmic	185	197	0.93