YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|130484025, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNATPLLPF VDPNQHVNMT VDIEAIMNKV STVFLTIIIL FGTTGNSVVI WVAGFRMKPN  60
   61 VTNVFLVNLA AADLIFCLTQ ISWLIKDIFF DHWPFGLFVC KFNGFVKYAN MFCSVFLLAV 120
  121 ISVDRALCVW CPVFTRKRRT VCAARMVSVG VWIMAGIFSL PYFVYRQVFP DKKNFSQCFF 180
  181 KVNETAEGNN SAKYVYYFIR FICGFLLPFL VIFICYTLAA IGIRRTRLSG KSRPLRILAV 240
  241 LVCAFFLCWA PYHFLRLVRF VNEDNEVVKL GWRMVSDLTY FNSCINPVLY LFMGLDVRQL 300
  301 CKQSLFGIFH RALTEEGQNR SQLSTKEESC NSFPKAAVVE CVNRF

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.90
Transmembrane Helix	33	55	0.90
Cytoplasmic	56	63	0.85
Transmembrane Helix	64	85	0.92
Non-Cytoplasmic	86	104	0.92
Transmembrane Helix	105	128	0.81
Cytoplasmic	129	140	0.83
Transmembrane Helix	141	165	0.85
Non-Cytoplasmic	166	197	0.97
Transmembrane Helix	198	220	0.91
Cytoplasmic	221	234	0.85
Transmembrane Helix	235	255	0.92
Non-Cytoplasmic	256	345	0.71