YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94733655
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.60
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADRITQMQK MEYILLLVVC LPYVDGATHT WNAYYTATTG LSQFPEFVAQ NLIDGQLMGY  60
   61 FDSKTNCFKS QFQWMEDKLG TAYDEQQTNI LQRHTAKFKN NIKVAIERFN QTQGVHTLQE 120
  121 IYGCEWDDQT GNLNAFRQYG YNGEDFLTLD FMEMRWITPV QQAMITTQKW NNDRGFIESD 180
  181 MNYFRSECIE WLQKYLEYGK SSLMKTVSPQ VSVLQKYYFS PVVCHATGFY PSGIKISWQK 240
  241 NGQDHDEDVE LGELLPNADG TFQKRSTLNV KPEEWKNSKF SCVVEHQGER ILTEDEIRTN 300
  301 NPSATIGIII GIVLSAVLLL FIAVAGFVVY WKKKGFKPVP ANPSDSVAEK TKSQLRTLTR 360
  361 TLAVIVDQTV FHTKAQTVHQ TSALFAPTTA LTAPQLYFVS VLYLFIYITN FLVANE

Type	Start	End	Confidence
Signal Peptide	1	26	0.60
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	305	0.95
Transmembrane Helix	306	330	0.92
Cytoplasmic	331	390	0.87
Transmembrane Helix	391	411	0.69
Non-Cytoplasmic	412	416	0.57