YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94733485
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSRFGTAVR IFITTLFAAV VLFAILLAYV TGYQFIHTEQ HHLSFGLYGA FLSLHLLLQS  60
   61 LFAYLEHRQM RGPSRPQHLR RTVALCIAAY QEDPDYLRKC LRSIRRISFP GLKVVLVVDG 120
  121 NRQEDAYMMD IFQEVMGGVE QTGCVVWKGN YHSNGDGGGG GGKGSVHAEE AARVARVVRS 180
  181 CRYSCIMQEW GGKREVMYTA FKALGDTVDY MQVCDSDTVL DPACTIEMLK ILEEDPDVGG 240
  241 VGGDVQILNK YDSWISFLSS VRYWMAFNVE RACQSYFGCV QCISGPLGMY RNSLLQQFLE 300
  301 PWYHQTFLGS KCSFGDDRHL TNRVLSFGFK TKFTARSQCQ TETPTQYLRW LNQQTRWSKS 360
  361 YFREWLYNAL WFHKHSLWMT YESVVTGFFP FFLVATVIHL FYRGRLWNIL LFLLTVQLVG 420
  421 MVKATYACFL RGSLVMIFMS LYSLLYMSSL LPAKIFALLT INKAGWGTSG RKKMVVNLIG 480
  481 AVPVTVWTAI LLGGVVYTIY CEVQEPFTET EKALLIAGTI VYASYWLILL VLYLAIVAKR 540
  541 CNKREEQFHL SYAEA

Type	Start	End	Confidence
Cytoplasmic	1	10	0.85
Transmembrane Helix	11	32	0.92
Non-Cytoplasmic	33	43	0.82
Transmembrane Helix	44	65	0.91
Cytoplasmic	66	271	0.97
Transmembrane Helix	272	290	0.55
Non-Cytoplasmic	291	377	0.61
Transmembrane Helix	378	402	0.82
Cytoplasmic	403	408	0.54
Transmembrane Helix	409	427	0.77
Non-Cytoplasmic	428	434	0.62
Transmembrane Helix	435	458	0.78
Cytoplasmic	459	474	0.82
Transmembrane Helix	475	499	0.88
Non-Cytoplasmic	500	513	0.89
Transmembrane Helix	514	537	0.90
Cytoplasmic	538	555	0.94