YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94732749
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	60	0.99
Transmembrane Helix	61	81	0.92
Non-Cytoplasmic	82	88	0.76
Transmembrane Helix	89	111	0.94
Cytoplasmic	112	132	0.94
Transmembrane Helix	133	152	0.97
Non-Cytoplasmic	153	159	0.91
Transmembrane Helix	160	179	0.95
Cytoplasmic	180	186	0.83
Transmembrane Helix	187	206	0.92
Non-Cytoplasmic	207	241	0.93
Transmembrane Helix	242	266	0.89
Cytoplasmic	267	318	0.85
Transmembrane Helix	319	341	0.88
Non-Cytoplasmic	342	400	0.48
Transmembrane Helix	401	427	0.79
Cytoplasmic	428	438	0.36
Transmembrane Helix	439	460	0.84
Non-Cytoplasmic	461	511	0.53
Transmembrane Helix	512	537	0.80
Cytoplasmic	538	547	0.54
Transmembrane Helix	548	572	0.63
Non-Cytoplasmic	573	631	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NEQGVDNPVF VKEDTLPDDL SDSDKESEKD SKSEKESSSC MSKACLPITV TETFFKTHSK  60
   61 IIKYIVLAIL AAGYLAYFIY ACYLSFQRAL ALVVLTCLGV FILVCELVFR YKGDSIKRCF 120
  121 KPVQRCFRSN MKWMKWVFIV IVVGLLVAWL AVDTRKRPEQ LISFGGVCLF IVAIFLFSAH 180
  181 RTAVRWSTVF WGLGLQFAIG LFVIRTEPGL VAFEWLGKQV QIFLDYTKAG SGFVFGNLID 240
  241 NIFAFQALPI VVFFSSVMSV LYYLGVMQWV ITKISWVMQV TMGTSSTETL SVAGNIFVGQ 300
  301 TEAPLLIRPY LKDMTKSEIH AVMTGGFATI AGSVMGAFIS FGIDASSLIS ASVMAAPCAL 360
  361 AISKLSYPET EKSKFTSKSQ IKVDSGGEQN VLEAVSGGAS ASIGLVANIA ANLIAFLAIL 420
  421 GFINATLRWL GGMVGYPDVT FELICSFVFM PVAFMMGIPY DESFKVAELI GTKLFLNEFI 480
  481 AYEKLSELKN NRLNGILDDN GDPNWISVRS EIICTYALCG FANFSSLGIV IGGLSSICPP 540
  541 KKGVISSLVL RALFTGTCVS LINACIADCV GLLQNAVFEP TTANLETCCY DLFKSTVNNG 600
  601 TVSFEGSWSV VANATIYFEN CCGLYNATVC M