YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	C2512_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLAHIFQTI WDFGTKDSVL QPIWDYVRLN HSETLRSPLF PVVLTVSSYF VLVLPYLSCD  60
   61 ILGRKWPAIY RYKIQPDKLP TTAMLLHCSG VTLYNHILLV IPAAVAQWMW RPPIPLPEQA 120
  121 PTLLELVGGV TGNLLLFDLQ YFIWHFLHHK IRWLYVTFHA IHHNYSAPFA LATQCLGGWE 180
  181 LVTVGFWTTL NPVLLRCHLL TTWMFMVVHV YVSVEDHCGY DFPWSTSRLI PFGVYGGPSK 240
  241 HDVHHQKPNT NFAPHFSHWD KMFGTHADFR FSKPRE

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.52
Transmembrane Helix	39	62	0.74
Cytoplasmic	63	82	0.59
Transmembrane Helix	83	106	0.81
Non-Cytoplasmic	107	121	0.58
Transmembrane Helix	122	144	0.84
Cytoplasmic	145	164	0.46
Transmembrane Helix	165	190	0.59
Non-Cytoplasmic	191	193	0.30
Transmembrane Helix	194	212	0.47
Cytoplasmic	213	276	0.68