YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94732697, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWDFLTHLL DEISNHSTFV GKIWLTLLIV FRIVLTVVGG ETIYDDEQSE FVCNTLQPGC  60
   61 KNVCYDAFAP LSHVRFWVFQ IIMISTPSVM YLGFAMHKIA RMADNEYQPR KHKMLSTVHQ 120
  121 RMNRDYDMVD EMTEEVPMIP EEIEPSEKDN KSAASTKTTA ASDAAVKHDG RRRIKRDGLM 180
  181 KVYVLQLISR VAFEIAFLFG QCILYGFEVS PSYICTRSPC PHTVDCFVSR PTEKTIFLLI 240
  241 MYVVSVLCLA LTVLEILHLG IGGLRDSFRS RANRRLPVHR PSTSTICHRL SSAPPGYQAV 300
  301 QKKYSSGKLK AEFLSDSGRE SLADDNTTRD LDRLRRHLKI AQQHLDQAYH TEEVGASHNS 360
  361 GPDSKSIAAE QNRLNQAQGG FGSTEEKEAH A

Type	Start	End	Confidence
Cytoplasmic	1	19	0.91
Transmembrane Helix	20	39	0.89
Non-Cytoplasmic	40	75	0.93
Transmembrane Helix	76	95	0.94
Cytoplasmic	96	181	0.97
Transmembrane Helix	182	204	0.80
Non-Cytoplasmic	205	237	0.85
Transmembrane Helix	238	261	0.92
Cytoplasmic	262	391	0.88