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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|122890981, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLVLFAFLI SCSCARGGCE PKTVNIGAVL SQKRYEQVFK DAVTQANNIY GKDKFKMNAI  60
   61 SVTHKPNAIQ MALSVCEDLI SNQVYAILVS HPPQSNDHLT PTPVSYTAGF YRIPVVGLTT 120
  121 RMSIYSDKSI HLSFLRTVPP YSHQAQVWFD MMREFQWNHI ILIVSDDHEG RAAQKRLETL 180
  181 LEERETKSKN RNYENLDQLS FDNKRGPKAE KVLLFSQDTN LTALLQEAKE LEARVIILSA 240
  241 SEDEAAAIYK VARQLNMTGS GYVWLVGERE MSGKALSEAP DGLLGLQLIN GKNESAHIYD 300
  301 AVAVVAQSIQ ELFEKENITE PPRGCVGNTN IWKTGPLFKR VLMSSKYPDG LTGRVEFNDD 360
  361 GDRRFAHYSI LNYQKTRLVQ VGVYNGSQVV MNAQRKIIWP GGETEKPKGY QMSTRLKIVT 420
  421 IHQEPFVYVK PTLRDGTCKE EHTVNGVKIK KVICTGPNET IPGRPIVPQC CYGFCIDLLI 480
  481 KLAFTMNFTY EVHLVADGKF GTQERVNNSN KKEWNGMMGE LLSGLADMIV APLTINNERA 540
  541 QYIEFSKPFK YQGLTILVKK EIPRSTLDSF MQPFQSTLWL LVGLSVHVVA VMLYLLDRFS 600
  601 PFGRFKVNSE EEEEDALTLS SAMWFSWGVL LNSGIGEGAP RSFSARILGM VWAGFAMIIV 660
  661 ASYTANLAAF LVLDRPEERI TGINDPRLRN PSDKFIYATV KQSSVDIYFR RQVELSTMYR 720
  721 HMEKHNYESA AEAIQAVRDN KLHAFIWDSA VLEFEASQKC DLVTTGELFF RSGFGIGMRK 780
  781 DSPWKQNVSL AILSSHENGF MEDLDKTWVR YQECDSRSNA PATLTFENMA GVFMLVAGGI 840
  841 VAGIFLIFIE IAYKRHKDAR RKQMQLAFAA VNVWRKNLQD RKSGRAEPDP KKKASFRSIS 900
  901 TNLASNIKRR RSSKDTPYPT DITGQLNLSD PSVSTVV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle