YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94732459
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSCKYNGGI VRPLGSLGAS RRNLAELDSE TQPLQTLHTS GLEVVVSKGN GEDPSKQSSE  60
   61 NLVTQRPCSA PHKKNKDIGY KLGHRRALFE KRKRLSDYAL IFGMFGIVVM VTETELSWGV 120
  121 YTKESSYSFA LKCLISLSTV ILLCLIIMYH AREIQLFMVD NGADDWRIAM TYERILFIVL 180
  181 ELLVCAIHPI PGQYVFTWTA RLAFTYTPSV ADADVDIILS IPMFLRLYLI GRVMLLHSKL 240
  241 FTDASSRSIG ALNKINFNTR FVMKTLMTIC PGTVLLVFSI SSWIIAAWTV HVCERYHDKV 300
  301 EVTSNFLGAM WLISITFLSI GYGDMVPNTY CGKGVCLLTG IMGAGCTALV VAVVARKLEL 360
  361 TKAEKHVHNF MMDTQLCKRV KNTAANVLRE TWLIYKHTKL VKKIDHAKVR KHQRKFLQAI 420
  421 HQLRSVKMEQ RKLNDQANTL VDLAKTQNVM YDLVSELQER SEELEKRIGH LETKLDSINS 480
  481 SLQALPGLLS QAIQQQQHHL LDGLTQRGFT LTRPSSQTSE RSWASSVHRR RSPSTAPHTS 540
  541 SDSG

Type	Start	End	Confidence
Cytoplasmic	1	94	0.99
Transmembrane Helix	95	116	0.87
Non-Cytoplasmic	117	127	0.84
Transmembrane Helix	128	149	0.94
Cytoplasmic	150	171	0.92
Transmembrane Helix	172	192	0.87
Non-Cytoplasmic	193	214	0.80
Transmembrane Helix	215	230	0.64
Cytoplasmic	231	264	0.61
Transmembrane Helix	265	287	0.87
Non-Cytoplasmic	288	301	0.62
Transmembrane Helix	302	326	0.77
Cytoplasmic	327	333	0.55
Transmembrane Helix	334	355	0.92
Non-Cytoplasmic	356	544	0.64