YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|94732436
Protein type: Transmembrane
Type Confidence: 0.96
Topology Confidence: 0.21
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AEIPSDPSVV SSSSWNMSRA AERDHFLRLD APMNNITTSL GQTAELHCHV SGTPSPSVRW  60
   61 LKNDAPVVQE PRRVSYRPTP YGSRLRIKNL DTTDTGYFQC VATNSYGTVS TTGILFVKFD 120
  121 PAPTPLPGRP SPEDFDEEGF CQPYRGIACA RFIGNRSIFV DSLQMQGEIE TQITAAFTMI 180
  181 GTSNHLSDRC SQFAIPSLCH FAFPTCDRSS GMDKPRDLCK DECEILENDL CKTEYIIARS 240
  241 NPLILKRLKL PKCEDLATLD SPEAANCMRI GIPIAETINK SHKCYNNSGS DYRGTVSVTK 300
  301 SGRQCQPWNS QYPHSHTFLA MRYPELNGGH SYCRNPGNKH DAPWCFTLDE AVRMELCDIP 360
  361 PCDLPKHGSS SNSMGILYIL VPSVAIPLAI ALLFFFICVC RNNQKASRPP APRQPKPVRG 420
  421 QNVEMSMLTA YKPKSKAKEL PLSAVRFMEE LGESAFGKIY KGHLYLPGME HAQLVAIKTL 480
  481 KDISSAQHWG DFQQEASVLA ELHHPNVVCL LGVVTQEQPV CMLFEFLAQG DLHEFLIMRS 540
  541 PHSDVGCSSD EDGTVKSSLD HGDFLHLAIQ VAAGMEYLAS HFFIHKDLAA RNILVGEQLH 600
  601 IKISDLGLSR EIYSSDYYRV QPNTLLPIRW MPPEAIVYGK YSTDSDVWAF GVVLWEIFSF 660
  661 GLQPYYGFSN QEVMEMVRKR QLLPCPEDCP PRMYALMTEC WQEGPARRPR FKDIHTRLRA 720
  721 WEGLSSHASS STPSGGNATT QTTSLSASPV SNLSSPRYAG YIYGAPQSLQ PGQITGFMAA 780
  781 PMPQSQRFIP VNGYPIPTGY AAFPAAHFAA SQGPPQVVQH CPPPKSRSPS SASGSTSTGH 840
  841 VTSVPSTGSN HDANTPLLSH CVTLTPMTAV PGGTLPVFGH MAQKAMQIDP SQAALLADTN 900
  901 RLMYSESIIT ADL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle