YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157423292, gi...
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSSSSIRMS SGGSSRFTGV RAGSVYGGAG GSGVRISSSS ASRSYSAGGG AGFGGGAGAG  60
   61 FNLSDGIDSS ANEKATMQNL NDRLASYLEK VRILEKENAD LELKIRQFLD SKATPNARDY 120
  121 SAYYATISDL QAKILHATGV NAGIYLHIDN AKLAADDFKV KFDNEQSMRH AVEADISGLR 180
  181 KVLDELTMTR SDLEMQIEGL KEELVFLKKN HEEELLAART QMGGQVNVEV DAAPQEDLTK 240
  241 IIADIREHYE AVSAKYQKDF EQWFQSKSES LNKEVAASTE TLQSSRSEFT ELKRTLQSLQ 300
  301 IELQSQLSMK ASLEGTLADT QARYANMLNG YQLQVGSLEE QLVHLRGDLE RQRQEYQMLL 360
  361 DIKTRLEMEI AEYRRLLDGE ATSVSTSSSK TSTTRKVVTI VEEVVDGKVV SSSSKATSQT 420
  421 KTT

Type	Start	End	Confidence
Cytoplasmic	1	16	0.62
Transmembrane Helix	17	36	0.57
Non-Cytoplasmic	37	423	0.93