YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|130486135, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDELEPGMN DVIVSHYNHS GKWGRPRSTG MCKTAFLMCI CALIVIENIT VLLALWRNKR  60
   61 FHSRMYFLIG NLALSDLLAG VAYVVNIFTS GRNTFFLSPG QWLLREGSMF VALSASTFSL 120
  121 LAIGIERHMT MVRLRPCETA GRGRLLALLG ACWAVSVLLS ALPSLGWNCL DRVHTCSTVL 180
  181 PLYDKSYIAF CISVFTALLA AIVVLYVRIY QLVTSSGRRV SSRPSDRSLA LLRTVVIVLG 240
  241 VFVACWAPLF SLLLLDVGCS PEQCPILYKV DWFIALAVLN SALNPLIYTF SSREMRTAFL 300
  301 RVLCCCQTSL DSMPTVAGTA LPGIVIHTAE NSKSSMAGAG SGAAKSSLMQ SKVPTPSNSH 360
  361 HQDPSQTAVT HSSGPGNLLS AVLVKAGALP ALGKF

Type	Start	End	Confidence
Non-Cytoplasmic	1	33	0.91
Transmembrane Helix	34	56	0.89
Cytoplasmic	57	65	0.89
Transmembrane Helix	66	87	0.92
Non-Cytoplasmic	88	106	0.83
Transmembrane Helix	107	125	0.95
Cytoplasmic	126	144	0.90
Transmembrane Helix	145	165	0.94
Non-Cytoplasmic	166	186	0.93
Transmembrane Helix	187	210	0.94
Cytoplasmic	211	228	0.98
Transmembrane Helix	229	250	0.95
Non-Cytoplasmic	251	271	0.84
Transmembrane Helix	272	291	0.91
Cytoplasmic	292	395	0.81