YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94732096
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EAGEENWDAE SCQTLPSPAV SHTKCLCSKL STFAVLAQKA KEPGMGPSSM PSVPLMVGCG  60
   61 ISCTALLILL LIYAAFWRYI RSERSIILVN FCLSILASNV LILVGQSQTL SKGLCTVTAA 120
  121 FLHFFFLASF CWVLTEAWQS YLAVIGKMRS RLIRKRFLCL GWALVVAVSV GFTRARGYGT 180
  181 PSYCWLSLEG GLLYAFVGPA AVIVLVNMLI GIVVFNKLMS RDGISDKSKK QRAGLLLKCS 240
  241 KCGVISSTAL SSSTASSAMA SLWSSCVVLP LLALTWMSAV LAITDRRSTL FQVLFAVFDS 300
  301 VQGFVIITVH CAMRREVQDA VRCRMGGCKD DSENSPDSCK NGQTDFEKDV DLACQTVIFK 360
  361 EVNTCNPATI TGTLSRISLD DEDDPKLAAH QEGVNFSSLP GNIPPPNLLV QVPPLGPLNE 420
  421 LSEQPLKKEV NVEQQGQHQR SGPIYLCTES GLGWARPNPS STQDSTGGGG GEGDYMVLPR 480
  481 RTVSLKPPPP PQDEGKPLNI TVDDPPFPPP PSPMTLHPAE SEAYPADFAA TDHISMNLNR 540
  541 SYSTLKQLPA HAGHTHSHTN THTLQVKQNR PSVRQILTSG TVERTRTLPR NLGSTNTSIS 600
  601 AGSLERKRVR YSELDFEKVM HTRKRHSELY HELN

Type	Start	End	Confidence
Non-Cytoplasmic	1	52	0.98
Transmembrane Helix	53	77	0.91
Cytoplasmic	78	85	0.93
Transmembrane Helix	86	105	0.96
Non-Cytoplasmic	106	115	0.74
Transmembrane Helix	116	135	0.89
Cytoplasmic	136	155	0.81
Transmembrane Helix	156	175	0.93
Non-Cytoplasmic	176	191	0.89
Transmembrane Helix	192	215	0.91
Cytoplasmic	216	234	0.92
Transmembrane Helix	235	255	0.59
Non-Cytoplasmic	256	259	0.50
Transmembrane Helix	260	283	0.87
Cytoplasmic	284	289	0.58
Transmembrane Helix	290	312	0.69
Non-Cytoplasmic	313	634	0.77