YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ncx-4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVWWANTIGE TFVIPTEIIG LTILAAGTSI PDLITSVIVA RKGLGDMAVS SSVGSNIFDV  60
   61 CVGLPIPWLL YFLIEYIKHP NEPLSPISVS SKGLLCSVGM LFIMLIVLVF AIFLSGWKMN 120
  121 KIFGILMIVS YVFFCVFSVS LETDKLVCPL NICG

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.56
Transmembrane Helix	13	39	0.74
Cytoplasmic	40	51	0.49
Transmembrane Helix	52	74	0.82
Non-Cytoplasmic	75	92	0.52
Transmembrane Helix	93	114	0.94
Cytoplasmic	115	121	0.49
Transmembrane Helix	122	141	0.92
Non-Cytoplasmic	142	154	0.52