YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91204151
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.75
Transmembrane Helix	16	36	0.90
Non-Cytoplasmic	37	97	0.83
Transmembrane Helix	98	118	0.91
Cytoplasmic	119	123	0.88
Transmembrane Helix	124	142	0.91
Non-Cytoplasmic	143	153	0.67
Transmembrane Helix	154	170	0.89
Cytoplasmic	171	177	0.85
Transmembrane Helix	178	195	0.78
Non-Cytoplasmic	196	200	0.58
Transmembrane Helix	201	219	0.77
Cytoplasmic	220	231	0.63
Transmembrane Helix	232	251	0.95
Non-Cytoplasmic	252	292	0.75
Transmembrane Helix	293	316	0.90
Cytoplasmic	317	323	0.87
Transmembrane Helix	324	345	0.93
Non-Cytoplasmic	346	352	0.83
Transmembrane Helix	353	370	0.96
Cytoplasmic	371	376	0.71
Transmembrane Helix	377	396	0.89
Non-Cytoplasmic	397	817	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNATAVSTKM PGSWKWQVIP VAFLVIWSCI IFVNTLRNNF VYDDSVTIVN NHLIKNWDNF  60
   61 RTLFSFQYFM LSGEISYRPV VTFTYFLDYS LWGENPSGYH FTNLLFHIAN VTVFYFFIKK 120
  121 ITRIHSLAFI SALLFATHPV ITETVNSISY REDILAAFFY LMTFILFLKI DDGLKKKGAF 180
  181 YLCYSGSLTF YALSLFSKEM AVTLPVMLVI YTFFFPSKNN PFKECVKKMK GVYIGYFLVT 240
  241 CCYLIIQFWV FKDVSINLSE SGQSIFVMFK VLASYIKLLF LPFDLNADYV ILPVLADVVS 300
  301 FSISVVLIIV LIIVLLRIGK GNKLFCFFAV WFFVTLSPVS NIIPLSNIMS ERYMYIPLMG 360
  361 FSGAVGVLFW KGVSENIFAK ICFGVILIVF AFISISRNVV WHDEFALWHD ALAREPDSAR 420
  421 AHHNLGVVYN SKGMYEKAEY EYKKTLEIKP NDAGAYYNLG NLYERKELIG DAIAAYEKAI 480
  481 QSNPYHADAY NNIGNIYKKK KQYPAAVKMY EKAIRCNPFD FRYHSNLGLI YLETKNYRES 540
  541 VDAFLKALKI APDKSSTHNS LGNVLKEMGD FDGAEEAYKT ALQLDPADAN IHNSLGMLYT 600
  601 NMKQFDKAMR EFDTAIRLDP KMASAYNNLG IAYANKGDGE KAAEALNTAV ALGFDGADVH 660
  661 NNLACVYMTM GMTDNAIREL DIVLEYDQTD CNAHCNLGIA YLSKKNVDKA ISEFEEAIKI 720
  721 NADDADFHHY LGNALMEKGR YGEAVDAFAR AIEINPENSS VHKALGVVYA NYFNNTRKAL 780
  781 FHLKETLRLN PNQPMAGEIE AAIVTLSGGS DGMAQKP