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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: DNJ21_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASEENSAL FPIFILTIMA IPLVPYTMVK LSGALSKKQR TIHCQCLECD RSGKYKRSLF  60
   61 KKISNFSTWS NLTLVLLWVV MIFLIYYTKN MSREAQVFDP FSILGLEPGV TDSEIKKAYR 120
  121 RLSIQYHPDK NPDPEANKYF VEFISKAYQA LTDSVSRENF EKYGHPDGRQ GFQMGIALPQ 180
  181 FLLDIDGASG GILLLWIVGV CILLPLVIAV IYLSRSSKYT GNYVMHQTLS AYYYLMKPSL 240
  241 APSKVMEVFT KAAEYMEIPV RRTDDEPLQK LFMSVRSELN LDLKNMKQEQ AKFWKQHPAI 300
  301 VKTELLIQAQ LTRESGVLSP ALQGDFRRVL ELAPRLLEEL LKMAVIPRTA QGHGWLRPAV 360
  361 GVVELSQCIV QAVPLSARKS SGVSSEGISP FLQLPHFSDA VVKKIARKKV KSFQDLQEMR 420
  421 LEDRSELLTQ VAGLSATDVE DIEKVLEMMP SITVDITCET EGEEGIQEGD IVTLQAWVTL 480
  481 KRPNGLVGAL PHAPYFPFHK EENYWVLLAD SVSNNVWFSQ KVSFLDEGGA ITAASKAISE 540
  541 SMEGSGAGVK ETNDAVREAI EKVKGGSRLV MGKLQAPAEG TYNLTCFCLC DTWIGCDKKQ 600
  601 ALKVKVLKRT RAGTRGLVSD EGAIAEEGME EEDEIEEEDY DDDYESEYSE DEDEKKDMDE 660
  661 KRGSKKANGS VKQKKESSSE ESGSEEE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle