YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110742117
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWWMMGEAGG HYCSKKTDDI CGGVCSQEPG RFFSFSRLCC ALRGVDMKTY IFLLVIVPTC  60
   61 VLAGYVHGQK ISYFLRPLWE SPPKPFHDIP HYYHENASME TLCKLHGWGV RDYPRRVYDA 120
  121 VLFSNELDIL AVRWRELFPY ITQFVLLESN TTFTGLPKPL VFAAHRDEFK FIESRLTYGT 180
  181 VGGRFVKGQN PFYEEAYQRV ALDQLLRIAG ITDDDLLLMS DVDEIPSRHT INLLRWCDEI 240
  241 PKILHLRLKN YLYSFEFLVD NKSWRASIHR YETGKTRYAH YRQSDEILAD AGWHCSFCFR 300
  301 RISEFIFKMK AYSHNDRVRF GHFLNPKRVQ RVICKGADLF DMLPEEYTFK EIIGKMGPIP 360
  361 HSFSAVHLPS YLLKNADKYR FLLPGNCIRE SE

Type	Start	End	Confidence
Cytoplasmic	1	48	0.82
Transmembrane Helix	49	68	0.80
Non-Cytoplasmic	69	392	0.99