YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110740946
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.95
Transmembrane Helix	38	56	0.87
Non-Cytoplasmic	57	72	0.66
Transmembrane Helix	73	96	0.80
Cytoplasmic	97	119	0.76
Transmembrane Helix	120	138	0.94
Non-Cytoplasmic	139	151	0.74
Transmembrane Helix	152	172	0.87
Cytoplasmic	173	184	0.80
Transmembrane Helix	185	207	0.94
Non-Cytoplasmic	208	216	0.86
Transmembrane Helix	217	239	0.75
Cytoplasmic	240	254	0.70
Transmembrane Helix	255	277	0.88
Non-Cytoplasmic	278	296	0.74
Transmembrane Helix	297	317	0.79
Cytoplasmic	318	335	0.75
Transmembrane Helix	336	357	0.94
Non-Cytoplasmic	358	377	0.83
Transmembrane Helix	378	400	0.81
Cytoplasmic	401	407	0.55
Transmembrane Helix	408	431	0.80
Non-Cytoplasmic	432	436	0.62
Transmembrane Helix	437	458	0.87
Cytoplasmic	459	488	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPTAPLLTH GGEVEEDYAP ARSWTDVKRV LSTESAKLWM IAAPVGFNII CQYGVSSVTN  60
   61 IFVGHIGEVE LSAVSISLSV IGTFSFGFLL GMGSALETLC GQAYGAGQVN MLGVYMQRSW 120
  121 IILFVSYFFL LPIYIFATPV LRLLGQAEEI AVPAGQFTLL TIPQLFSLAF NFPTSKFLQA 180
  181 QSKVVAIAWI GFVALSLHVI MLWLFIIEFG WGTNGAALAF NITNWGTAIA QIVYVIGWCN 240
  241 EGWTGLSWLA FKEIWAFVRL SIASAVMLCL EIWYMMSIIV LTGRLDNAVI AVDSLSICMN 300
  301 INGLEAMLFI GINAAISVRV SNELGLGRPR AAKYSVYVTV FQSLLIGLVF MVAIIIARDH 360
  361 FAIIFTSSKV LQRAVSKLAY LLGITMVLNS VQPVVSGVAV GGGWQGLVAY INLGCYYIFG 420
  421 LPFGYLLGYI ANFGVMGLWS GMIAGTALQT LLLLIVLYKT NWNKEVEETM ERMKKWGGSE 480
  481 TTSKDILA