YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110740443
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDWNQERLKD EFRDGCEEIR LRFSRTAFSS PPFTVHRHFS LLSFSPTRFP CLFGFLAMGD  60
   61 EKPVIVMANR ERDRELLIPV ADSGDKDDGS SSKPSSSSSA SSSSHQSSHE TLSLFIRGWA 120
  121 SKKFMTGCVI LLPIAITFYI TWWFIHFVDG FFSPIYAQLG INVFGFGFLT SIAFIFLVGV 180
  181 FMSSWLGASV LNLGEWFIKR MPFVRHIYNA SKQISTAISP DQNTQAFKEV AIIRHPRVGE 240
  241 YAFGFITSTV VLQNYPTEEE LCCVYVPTNH LYIGDILLVN SNDVIRPNLS VREGIEIVVS 300
  301 GGMSMPQILS TVDKPLASID RATSL

Type	Start	End	Confidence
Cytoplasmic	1	123	0.95
Transmembrane Helix	124	146	0.92
Non-Cytoplasmic	147	165	0.86
Transmembrane Helix	166	191	0.83
Cytoplasmic	192	325	0.97