YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110737977
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEPQNQITNP ANSKPNHQSG DVHKDETMMM KKKKDTNPSN LEKRKLKGKK KEIMDNDEAS  60
   61 SSYCSTSSTS NSNSTKRVTR VVHRLRNPMR LGMARRSVGE RQAEKLAKPL GFSLAAFANM 120
  121 VIARKNAAGQ NVYVDDLVEI FATLVEESLA NVYGNKLGSF ATNFEQTFSS TLKILKLTNE 180
  181 CANPHQSNNN DGGSCNLDRS TIDGCSDTEL FERETSSATS AYEVMQGSAT ATSLMNELAL 240
  241 FEETLQLSCV PPRSSAMALT TDERFLKEQT RANDLKTVEI GLQIRELRCK ETALGLKFES 300
  301 NNLGKAALEL DVSKAAFRAE KFKTELEDTR KEEMVTRIMD WLLVSVFSML ASMVLGVYNF 360
  361 SIKRIEDATS VCDQSEEKSS SWWVPKQVSS INSGFNTFIC RVRVWVQIFF GVLMIIVFTY 420
  421 FLNKRSSGTK QTMPISFIVL FLGIFCGVSG KLCVDTLGGD GKLWLIVWEV FCLLQFVANV 480
  481 FTLALYGLMF GPINVTQETR SNRCNSMFPY WARRSVVYVV ILFVLPVING LLPFATFGEW 540
  541 RDFAMYHLHG GSDYA

Type	Start	End	Confidence
Cytoplasmic	1	338	0.81
Transmembrane Helix	339	360	0.82
Non-Cytoplasmic	361	403	0.87
Transmembrane Helix	404	422	0.97
Cytoplasmic	423	432	0.82
Transmembrane Helix	433	454	0.91
Non-Cytoplasmic	455	470	0.75
Transmembrane Helix	471	495	0.84
Cytoplasmic	496	515	0.85
Transmembrane Helix	516	537	0.95
Non-Cytoplasmic	538	555	0.89