YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90265124
Protein type:	Globular with Signal Peptide
Type Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQRRAPPRA AGLRAPPAAA AASSRRTPPL RVAGRAAAAC PAASDKRGRR QISLDRTVNG  60
   61 IFVVRHKRIL LPIPTAFRST TRVRLTSPAF LPSRRNFEGY IPQSCSGSSL QIYSRSSLLS 120
  121 LSPSSALMVS SQLNSSDVAQ RSEEWFALRK DKLTTSTFST ALGFWAGNRR SELWSEKVFG 180
  181 STEIKLEDAA RSAMNWGTVN ESVAIEQYTS ITGRSVGSLG FAVHTEANFG WLGASPDGVL 240
  241 GCDPDGGILE VKCPYNKGKP ELALPWRAMP YYYMPQVQGL MEIMGRDWVE LYCWTPNGSS 300
  301 LFRVPRDRGY WELIHEVLRD FWWGNVMPAR ELVLLGKEAE ARSFEPQPKH RSTNLVIFRS 360
  361 RKLASEAKLL CKDIGGHVEF FP

Type	Start	End	Confidence
Signal Peptide	1	21	0.89
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	382	0.99