YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CRR60_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPMAKLRNII KTLSIFFFLI AATAPSLSSA TSATDTFVFG GCSQQKFSPA SAYESNLNSL  60
   61 LTSLVNSATY SSYNNFTIMG SSSSDTARGL FQCRGDLSMP DCATCVARAV SQVGPLCPFT 120
  121 CGGALQLAGC YIKYDNISFL GQEDKTVVLK KCGSSEGYNT DGISRRDAVL TELVNGGGYF 180
  181 RAGGSGDVQG MGQCVGDLTV SECQDCLGTA IGRLKNDCGT AVFGDMFLAK CYARYSTDGA 240
  241 QHYAKSHNYK TNYGGEKTFA IIIGLLAAVV LLIIFLLFLR GVCSRGGDFS ILHSFTLI

Type	Start	End	Confidence
Signal Peptide	1	32	0.97
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	258	0.99
Transmembrane Helix	259	282	0.89
Cytoplasmic	283	298	0.97