YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|90399332
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQHYTKTIC IAVVLVAVLF SLSSSAAAGS GAAVSVQLEA LLEFKNGVAD DPLGVLAGWR  60
   61 VGKSGDGAVR GGALPRHCNW TGVACDGAGQ VTSIQLPESK LRGALSPFLG NISTLQVIDL 120
  121 TSNAFAGGIP PQLGRLGELE QLVVSSNYFA GGIPSSLCNC SAMWALALNV NNLTGAIPSC 180
  181 IGDLSNLEIF EAYLNNLDGE LPPSMAKLKG IMVVDLSCNQ LSGSIPPEIG DLSNLQILQL 240
  241 YENRFSGHIP RELGRCKNLT LLNIFSNGFT GEIPGELGEL TNLEVMRLYK NALTSEIPRS 300
  301 LRRCVSLLNL DLSMNQLAGP IPPELGELPS LQRLSLHANR LAGTVPASLT NLVNLTILEL 360
  361 SENHLSGPLP ASIGSLRNLR RLIVQNNSLS GQIPASISNC TQLANASMSF NLFSGPLPAG 420
  421 LGRLQSLMFL SLGQNSLAGD IPDDLFDCGQ LQKLDLSENS FTGGLSRRVG QLGNLTVLQL 480
  481 QGNALSGEIP EEIGNLTKLI SLKLGRNRFA GHVPASISNM SSLQLLDLGH NRLDGMFPAE 540
  541 VFELRQLTIL GAGSNRFAGP IPDAVANLRS LSFLDLSSNM LNGTVPAALG RLDQLLTLDL 600
  601 SHNRLAGAIP GAVIASMSNV QMYLNLSNNA FTGAIPAEIG GLVMVQTIDL SNNQLSGGVP 660
  661 ATLAGCKNLY SLDLSGNSLT GELPANLFPQ LDLLTTLNIS GNDLDGEIPA DIAALKHIQT 720
  721 LDVSRNAFAG AIPPALANLT ALRSLNLSSN TFEGPVPDGG VFGNLTMSSL QGNAGLCGGK 780
  781 LLVPCHGHAA GNKRVFSRTG LVILVVLIAL STLLLLMVAT ILLIGYRRYR RKRRAAGIAG 840
  841 DSSEAAVVVP ELRRFSYGQL AAATNSFDQG NVIGSSNLST VYKGVLAGDA DGGMVVAVKR 900
  901 LNLEQFPSKS DKCFLTELAT LSRLRHKNLA RVVGYAWEAG KIKALVLDYM VNGDLDGAIH 960
  961 GGAAAPPTAP SRWTVRERLR VCVSVAHGLV YLHSGYDFPV VHCDVKPSNV LLDGDWEARV1020
 1021 SDFGTARMLG VHLPAAADAA AQSTATSSAF RGTVGYMAPE FAYMRTVSTK VDVFSFGVLA1080
 1081 MELFTGRRPT GTIEEDGVPL TLQQLVDNAV SRGLDGVHAV LDPRMKVATE ADLSTAADVL1140
 1141 AVALSCAAFE PADRPDMGAV LSSLLKMSKL VGED

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle