YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|125550266, gi...
Protein type: Globular with Signal Peptide
Type Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATAAALAV TDELALPLRA VGDLAAAAGV SREEVVVITQ CASLGGKLPF DDASVGSVLA  60
   61 VIKKVENLGD LFITEISRVL KAGGMVLIQS SPSDQDPNNS IQRKLLLGGF VDVQASAASS 120
  121 QDSEHSVTIK AKKVSWSMGS SFPLKKATKG LPKIQIDDDS ELIDEDSLLT EDDLKKPELP 180
  181 VVGDCEVGAT RKACKNCTCG RAEAEEKVEK LNLTSEQINN PQSACGNCGL GDAFRCGTCP 240
  241 YRGLPAFKPG EKEIDFGAPV VLGQEIDFAS VMTSLPDRGV SSSSSDPLCE GNIAPCSSSS 300
  301 EQKEDCSLKQ SKTSILSCVF NSPFNIFEAH QDSSANKSPK SSSGSYDWLR VLRRIVCSGS 360
  361 MWRFLGTSKV LTSSDVWFLG KCYKLSSEES SSDSDSESGH ATFLEDFSSR IWITYRRGFD 420
  421 AISDSKYTSD VNWGCMVRSS QMLVAQALIF HHLGRSWRRP SEKPYNPEYI GILHMFGDSE 480
  481 ACAFSIHNLL QAGNSYGLAA GSWVGPYAMC RAWQTLVRTN REQHEVVDGN ESFPMALYVV 540
  541 SGDEDGERGG APVVCIDVAA QLCCDFNKGQ STWSPILLLV PLVLGLDKIN PRYIPLLKET 600
  601 FTFPQSLGIL GGKPGTSTYI AGVQDDRALY LDPHEVQMSA TVIIWLFLQY PFYAWNPFCY 660
  661 GSYSGVFSTS QAVDIAADNI EADTSSYHCS TVRDLALDLI DPSLAIGFYC RDKDDFDDFC 720
  721 SRATELVDKA NGAPLFTVVQ SVQPSKQMYN QDDVLGISGD GNINVEDLDA SGTDAGGVGV 780
  781 TYGMRGTNMP PPADVARFLS RDTIFDRVRL LDADPRALRA FAGTGLAVDV TVPNADVPRL 840
  841 AASRASARRW VRASVAPYAE ATNVSRVLVG DEVISQANRT LLLSLVPAMR NLHAALAAVL 900
  901 PPSPRRREII KVSTPHSLGI LAASTPPSAG RFHDGYDTAV VKPLLGFLRA TGAPFMVNAY 960
  961 PFYGGLTNDT LDYALFRVND GVTDDATGLL YANMLDAQLD AVHSAMRRLG FGDVDVVVSG1020
 1021 TGWPSAGEYW EVGAGADLAR NYNKNAIRHL GSGVGTPLMP NRTFELSIFS LFDENLKPGP1080
 1081 VSERNFGLYH ADMTPVYDAG ILTAPQEIVG TKVTPAPAPA LAPAADGRRR WCVPKPAADE1140
 1141 VALQVNIDFV CGQGGIDCGA IRAGGSCYDP NNVQAHAAFA MNLYFQSNGQ HEFDCDFGQT1200
 1201 GVITTVDPSY KSCKFT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle