YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PIGX
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.92
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAARVAAVRA AAWLLLGAAT GLTRGPATAF TAARSDAGIR AMCSEIILRQ EVLKDGFHRD  60
   61 LLIKVKFGES IEDLHTCRLL IKQDIPAGLY VDPYELASLR ERNITEAVMV SENFDIEAPN 120
  121 YLSKESEVLI YARRDSQCID CFQAFLPVHC RYHRPHSEDG EASIVVNNPD LLMFCDQEFP 180
  181 ILKCWAHSEV AAPCALDNED ICQWNKMKYK SVYKNVILQV PVGLTVHTSL VCSVTLLITI 240
  241 LCSTLILVAV FKYGHFSL

Type	Start	End	Confidence
Signal Peptide	1	29	0.97
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	229	0.98
Transmembrane Helix	230	251	0.82
Cytoplasmic	252	258	0.70