YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE40140
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSFGNASVD IDMLEQEMAA EQTANLSGNI AGMSAPKSSS NRRGPMQEVD LDAEFDTLEE  60
   61 PVWDTVKRDV LTVGAKFTHV VLPHGDKQQL LRDWDLWGPL FICVGLALLL QHNGGTESAP 120
  121 QFTQVFTITF FGSVIVTANI KLLGGNISFF QSLCVIGYCL LPPFVAAVLC SLFLHGIAFP 180
  181 LRLLITSIGF VWSTYASMGF LAGCQPDKKR LLVIYPVFLF YFVVSWMIIS HS

Type	Start	End	Confidence
Cytoplasmic	1	93	0.99
Transmembrane Helix	94	114	0.89
Non-Cytoplasmic	115	121	0.85
Transmembrane Helix	122	143	0.90
Cytoplasmic	144	153	0.77
Transmembrane Helix	154	175	0.93
Non-Cytoplasmic	176	182	0.68
Transmembrane Helix	183	204	0.91
Cytoplasmic	205	210	0.95
Transmembrane Helix	211	230	0.95
Non-Cytoplasmic	231	232	0.90