YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE40131
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLYKLHHLI WFCVVFGIIC NILVVLKISR DARNFKCFQK IQKVVEKLLL LQFVEPIYVS  60
   61 EVIEKESPEI PEIYNKSLQT MLFSFVTDGI GNKLFEVISL LGIAKTLKRR PVINATNPDY 120
  121 MQVLYADIQP LFPKLVEQFS LELIPDHFIT RERISWGKCC MFDDPKKLQS LKDQYLILEG 180
  181 HYFQSYKFFH HLRSQIRDWL APSKRMALKA AAVIPEKSKN DFIICTHIHR GEPPYNNHRK 240
  241 PSDPRFTRVA TEYLVDIYEK SHSRISVVVL GDDLNFVNEV FTQSIKSNTS SYTVITVPIL 300
  301 KPEIDLAISR IFCDVFLLTA PTSTFGWWLA YLAKKEAVIY YRDIEDSKDE VLRELEPVDY 360
  361 YPKEWRTLKT DKDGSIRL

Type	Start	End	Confidence
Cytoplasmic	1	6	0.51
Transmembrane Helix	7	28	0.90
Non-Cytoplasmic	29	378	0.55