YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89885409
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRLNNLVTF FTAITAFFFG SFITKILSSV DQCPAHRSRI PHLEPHPKLF LMVLVLSAPH  60
   61 NSDERNAMRS TWLANAGQSL TQPYLPEELI YLPTFNAQGH LQVELVAEQA SRLRQYTNWQ 120
  121 QSLLTEDPPK TKRLITVKHV FSIGTLDLSS SALAELEKEQ KQHNDLLLLN RHHDTYRNLT 180
  181 AKLMQSLDVL RRHNEFSYVL KVDDDTYVKL DSLVNTLVSY DRKLLRKRSE YRDHVLPQLY 240
  241 WGYFNGRSTI KTKGQWKESS YYLSKNYLPY ALGGGYVLSR SLCDYIVNNS QLLSPYGSED 300
  301 VSVGTWLAPL RHVYRWHDPR FDTSYAPRKC RSYHMVLHKR SGQMMRDIHD GELCSGIGSS 360
  361 ILSDYYYDWT RTADKCCDSL VA

Type	Start	End	Confidence
Cytoplasmic	1	6	0.69
Transmembrane Helix	7	27	0.70
Non-Cytoplasmic	28	382	0.97