YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89273430, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.82
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTLSELVAL LCFFSATASG YFVSIDAHAE ECFFEQVTSG TKMGLIFEVA EGGFLDIDVE  60
   61 ITGPDNKGIH KGDRESSGKY TFAAHMDGTY KFCFSNRMST MTPKIVMFTI DIGEAPKGQD 120
  121 METEAHQNKL EEMINELAVA MTAVKHEQEY MEVRERIHRA INDNTNSRVV LWSFFEALVL 180
  181 VAMTLGQIYY LKRFFEVRRV V

Type	Start	End	Confidence
Signal Peptide	1	20	0.97
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	168	0.99
Transmembrane Helix	169	191	0.75
Cytoplasmic	192	201	0.80