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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: EPHA6_RAT
Protein type: Transmembrane
Type Confidence: 0.66
Topology Confidence: 0.72
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGCEVREFL LQFGFFLPLL TAWTGDCSHV SNQVVLLDTS TVMGELGWKT YPLNGWDAIT  60
   61 EMDEHNRPIH TYQVCNVMEP NQNNWLRTNW ISRDAAQKIY VEMKFTLRDC NSIPWVLGTC 120
  121 KETFTLYYIE SDESHGTKFK PSQYIKIDTI AADESFTQMD LGDRILKLNT EVREVGPIER 180
  181 KGFYLAFQDI GACIALVSVR VFYKKCPFTV RNLAMFPDTI PRVDSSSLVE VRGSCVKSSE 240
  241 ERDTPKLYCG ADGDWLVPLG RCICTTGYEE IEGSCHACRP GFYKAFAGNT KCSKCPPHSS 300
  301 TFVEATSVCH CEKGYFRAEK DPPSMACTRP PSAPRNVAFN INETALILEW SPPSDTGGRK 360
  361 DLTYSVICKK CGVDASQCED CGAGLRFIPR PTGLINNSVV VLDFVSHVNY TFEIEAMNGV 420
  421 SELSISPKPF TAITVTTDQD APSLIGMMRK DWASQNSLAL SWQAPAFSNG AILDYEIKYY 480
  481 EKEHEQLTYS STRSKAPSVI ITGLKPATTY IFHIRVRTAT GYSGYSQKFE FETGDETSDM 540
  541 AAEQGQILVI ATAAVGGFTL LVILTLFFLI TGRCQWYIKA KMKSEEKRRT HLQNSHLRFP 600
  601 GIKTYIDPDT YEDPSLAVHE FEKEIDPSRI RIERVIGAGE FGEVCSGRLK TPGKREIPVA 660
  661 IKTLKGGHMD RQRRDFLREA SIMGQFDHPN IIRLEGVVTK RSFPAIGVEA FCPSFLRAGF 720
  721 LNGIQAPHPV TAGGSLPPRI PAGRPVMIVV EYMENGSLDS FLRKHDGHFT VIQLVGMLRG 780
  781 IASGMKYLSD MGYVHRDLAA RNILVNSNLV CKVSDFGLSR VLEDDPEAAY TTTGGKIPIR 840
  841 WTAPEAIAYR KFSSASDVWS YGIVMWEVMS YGERPYWEMS NQDVILSIEE GYRLPAPMGC 900
  901 PPSLHQLMLH CWQKERNHRP KFTDIVSFLD KLIRNPSALH TLVEDILVMP ESPGDVPEYP 960
  961 LFVTVGDWLD SIKMGQYKSN FMAAGFTTFD LISRMSIEDI RRIGVILIGH QRRIVSSIQT1020
 1021 LRLHMMHIQE KGFHV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle