YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89267457
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPVMRVSV PRWESGARYA VCVLGIVLSI YAFHVEREKE RDPGYKAICD FNEWVHCSTV  60
   61 LSSRWGRGFG MLGSIFGKDS LLNQPNSVFG LVFYLLQMLL GMTVSAVAAL VLMTSSIVSV 120
  121 VGSVYLAYIL YFVLKDFCVI CVTTYLLNFI LLIINYKRLV YLNEAWKRQL QDKQE

Type	Start	End	Confidence
Cytoplasmic	1	15	0.58
Transmembrane Helix	16	35	0.90
Non-Cytoplasmic	36	86	0.45
Transmembrane Helix	87	101	0.59
Cytoplasmic	102	102	0.22
Transmembrane Helix	103	129	0.70
Non-Cytoplasmic	130	131	0.43
Transmembrane Helix	132	156	0.79
Cytoplasmic	157	175	0.71