YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110808263
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLVLLNYGI WHDRRSALKF TDIDYFVFSD ASKYVSIGMS PYMRDTYRYT PMLAILLLPT  60
   61 QYGFPSWGKY LFSISDLIAG WLMIKLLSRR ISYKRSLIYS SFWILNPFVA IISTRGNCEA 120
  121 ILGILSIALL YLIEKKSVWL ASLILGFSVH FKIYPFMYGI AFLVYFSKPK KGSTFMEKFL 180
  181 SLLSINQLKI VVGSLFMFTI CNLLMYYLYG SPFLEHTYLY HFGRTDHRHN FSLHHLNLYY 240
  241 ESSFGAKASS LFAFLPQLSL CMLIPLVFGK KNLPGTLFAQ TFAFVTFNKV CTSQYFMWYL 300
  301 VFLPLVLPNS KLLSKKGLIC LSLWIIGQLL WLISAYNLEM LGKSVFIPLW LSGLLFFFFN 360
  361 VYELKIILDS L

Type	Start	End	Confidence
Cytoplasmic	1	45	0.78
Transmembrane Helix	46	64	0.67
Non-Cytoplasmic	65	69	0.68
Transmembrane Helix	70	88	0.87
Cytoplasmic	89	107	0.71
Transmembrane Helix	108	132	0.76
Non-Cytoplasmic	133	147	0.75
Transmembrane Helix	148	167	0.90
Cytoplasmic	168	187	0.89
Transmembrane Helix	188	209	0.93
Non-Cytoplasmic	210	247	0.91
Transmembrane Helix	248	268	0.85
Cytoplasmic	269	316	0.47
Transmembrane Helix	317	336	0.88
Non-Cytoplasmic	337	343	0.40
Transmembrane Helix	344	364	0.88
Cytoplasmic	365	371	0.45