YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|93456440, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTIISFIIV LGLLIFVHEL GHFLFAKLFK VKVLTFSLGF GPKLASRQAG ETEYRIGAFP  60
   61 LGGYVNMLGE NPAEEVDPAD QGRTFSSKPL WQRFIIVAAG PFFNLAFAVL LFFMIFAAVG 120
  121 IPQPAPGTNL GEIAPDSPAA EAGLQKGDTI LSIDGVATAE WEDVARLIRD SGGQPIELEI 180
  181 GRNGETFSTV GVPDKQEVKN IFGEVVGQRF MLGITRSSDT VYQSVSVFSA LGSGFEQTLS 240
  241 LIWLTLVAIG KMLQQIIPAS ELGGPILIAQ LAGQQMEAGW INFIYFMALI SINLGILNLL 300
  301 PIPILDGGHL TFFTIEAIIR RPVSMKVREI ASQVGILLII GLMFFVFYND IMRLFNG

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.71
Transmembrane Helix	5	26	0.85
Cytoplasmic	27	93	0.78
Transmembrane Helix	94	119	0.87
Non-Cytoplasmic	120	226	0.78
Transmembrane Helix	227	247	0.68
Cytoplasmic	248	255	0.48
Transmembrane Helix	256	273	0.48
Non-Cytoplasmic	274	280	0.48
Transmembrane Helix	281	309	0.75
Cytoplasmic	310	329	0.58
Transmembrane Helix	330	348	0.95
Non-Cytoplasmic	349	357	0.59