YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|93454070, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQRQVMTLP NLLTAFRFAV VPFIMLCLLP GAGELAGLIA FALFVIGALS DLADGYVARV  60
   61 MQSETVLGKL MDPLADKVLI AVALIMLIPL GKVAAWVAFL IIARELVITG FRGVAADAGI 120
  121 VIAAGGLGKI KSVFQYVALS ILIFPAALLP LPWLHDLGGA LLLLAMVLTV WSGVDYFVRF 180
  181 RKALSEQFAK RLTSWLPLNS LPRLGLNCWL KAPGAWGLVW KMTPCSGWEL YFRELLKWHR 240
  241 RVNLVARAPE PELLELHFLD SLTILPLCRF EPPPTGSPVV TDHEVRLPPV APSPARTAAG 300
  301 LPGTADSAKD AGSLLDIGSG AGFPGLVLKC CRPELALTLL EPRQKRVAFL RQVLRVTGLK 360
  361 AGCEVLAQRL VPGGGALAQR RWPLITGRAV ASVADFLDLC APLSPPGGRV ICMKGRRAAA 420
  421 EVEQWHRLKR PGEYRLDQEK EVHLPFSGVL RRLLIFVKEQ PAE

Type	Start	End	Confidence
Cytoplasmic	1	12	0.84
Transmembrane Helix	13	32	0.89
Non-Cytoplasmic	33	37	0.63
Transmembrane Helix	38	58	0.84
Cytoplasmic	59	77	0.77
Transmembrane Helix	78	100	0.91
Non-Cytoplasmic	101	107	0.59
Transmembrane Helix	108	127	0.82
Cytoplasmic	128	132	0.76
Transmembrane Helix	133	153	0.86
Non-Cytoplasmic	154	158	0.70
Transmembrane Helix	159	178	0.93
Cytoplasmic	179	463	0.72