YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94265745, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVYVWKGTN SYGEKRKGKF EAANEAAAKS HLKRMRVTPT VLKEAPKDLF ADISFFQPGV  60
   61 TAKDVVIFTR QLSTMIDAGL PLVQSLQILG EQQENPTFKK VLRAVRSEVE TGSTFADALK 120
  121 KHPHIFDNLY CNMMEAGEVG GILDTICARL ATFMEKAQAL KKKVKGAMTY PIISLCIALI 180
  181 VLAVMLIFVV PVFEEMFADF GSALPAPTQF VVDMSEFAQR NFIYILGGLF LLIYAIKRIY 240
  241 KTEKGQEKID ELLLKMPIIG TLLRRVAVAK FSRTLGTMLQ SGVPIMESLK VVARTAGNKV 300
  301 VEKAVFRVND SISEGRALAE PLAESGVFPG MVVQMINVGE STGALDTMLI KVADFYDEEV 360
  361 DQAVENLTAS IEPLMMVFLG GMIGGLVIAM YLPIFSMAAA IG

Type	Start	End	Confidence
Cytoplasmic	1	168	0.98
Transmembrane Helix	169	192	0.90
Non-Cytoplasmic	193	216	0.97
Transmembrane Helix	217	236	0.88
Cytoplasmic	237	375	0.93
Transmembrane Helix	376	395	0.94
Non-Cytoplasmic	396	402	0.60