YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|93453020, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.88
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKHFTVSLL TIVGLLLLPT LAGAQEAIPL PTFSLGIEEA TTPGQVSMTI QLLLVLTVLS  60
   61 MAPAILLMMT CFTRLIVVFS FLRNAIGTQQ MPPNQVLIGL ALFLTVFIMA PVFSQINQQA 120
  121 VGPYMDEEIG IEEALRTAAE PLREFMFKQT REKDLELFLG LSQSPRPQNK DDVSTFVLIP 180
  181 AFMISELKTA FTIGFILFIP FLVIDMVVAS VLLSMGMMML PPIMIALPFK ILLFVLVDGW 240
  241 YLIVGSLVRS FG

Type	Start	End	Confidence
Signal Peptide	1	24	0.86
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	52	0.93
Transmembrane Helix	53	77	0.86
Cytoplasmic	78	95	0.82
Transmembrane Helix	96	115	0.93
Non-Cytoplasmic	116	189	0.94
Transmembrane Helix	190	213	0.88
Cytoplasmic	214	225	0.65
Transmembrane Helix	226	244	0.90
Non-Cytoplasmic	245	252	0.72