YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|93452062, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.94
Transmembrane Helix	20	39	0.96
Non-Cytoplasmic	40	58	0.84
Transmembrane Helix	59	83	0.89
Cytoplasmic	84	95	0.93
Transmembrane Helix	96	118	0.92
Non-Cytoplasmic	119	149	0.96
Transmembrane Helix	150	169	0.94
Cytoplasmic	170	193	0.85
Transmembrane Helix	194	217	0.86
Non-Cytoplasmic	218	233	0.87
Transmembrane Helix	234	256	0.90
Cytoplasmic	257	265	0.85
Transmembrane Helix	266	288	0.91
Non-Cytoplasmic	289	321	0.91
Transmembrane Helix	322	343	0.87
Cytoplasmic	344	351	0.86
Transmembrane Helix	352	371	0.95
Non-Cytoplasmic	372	407	0.85
Transmembrane Helix	408	428	0.88
Cytoplasmic	429	452	0.75
Transmembrane Helix	453	474	0.90
Non-Cytoplasmic	475	479	0.65
Transmembrane Helix	480	501	0.89
Cytoplasmic	502	665	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSESPIESGT NARIRINPPV FIISAVLTVL LVGFAAIATE TAALVFNATQ SWVTESAGWF  60
   61 YVLAVAGFLV FIIGLAISNF GLVKLGSDHS EPDYSYLSWF AMLFSAGMGI GLMFFGVAEP 120
  121 VMHYVSPPVG DPETAEAARQ AMRITFFHWG IHAWAIYAVV AISLAYFAFR QGLPLTIRSS 180
  181 LYPLIGERIY GPIGHAVDIF AVLGTIFGVA TSLGLGVVQI NSGLDYLFGI PSSAVTQVIL 240
  241 IAVITGFATI SVVLGLDGGI RRISELNIIL ACSLLLFVLV FGPTIFLLQT LVQNTGMYIS 300
  301 SVFEMTFNLY AYEPTDWIGG WTLFYWGWWI AWAPFVGMFI ARVSKGRTIR EFVVGVLLVP 360
  361 VGFTFMWMTF FGDTALHMLM VQGISALSEA VAADTSVALF QFFEQLPFST ITALVATLLV 420
  421 VTFFVTSSDS GSLVVDILTS GGHAEPSPVW QRIFWAVVEG VVAATLLLAG GLAALQTATI 480
  481 ASALPFTVIM IVMCWGLLRA LRIEGFKQVS LREARVMPRG PHAALNWRKR LRTLLHHPGK 540
  541 REVLEYLETV VKPALEEVAE ELAKQQIEAR TGQGEDGRVW VEVLQGEEID FYYSVRPRAY 600
  601 EPPALVMRDT RADRVEALKY YRAEVHLQEG GQDYDIMNWG RDYVISDVLE QYERHLHFLK 660
  661 AVRHQ