YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|120609882, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQAMQYVTAA ILAAFVGYVG AWYVGAIEGN FALLLLLATV VTGAYWLAER LVFLPRRRRA  60
   61 AQAIEEAAVQ RRAELDRMGI AKVDGDVQEA KDRILMQPWW LDWTAGLFPV IAIVFVLRSF 120
  121 LFEPFKIPSG SMIPTLLVGD LILVNKFTYG IRLPVINKKI TQGTPPQRGD VMVFRYPPQP 180
  181 SMDYIKRVVG VPGDEIAYLN KRLTVNGKPV ETTALPDFLD EDTMRYFKQY DEHLGARPHR 240
  241 MINNPDVPAF IQGASDYAFR ENCRYSVEGV VCKVPEGHYF MMGDNRDNSF DSRYWGFVPD 300
  301 ANIVGKAFFV WMNFGNLKRI GGFQ

Type	Start	End	Confidence
Cytoplasmic	1	6	0.85
Transmembrane Helix	7	26	0.92
Non-Cytoplasmic	27	30	0.87
Transmembrane Helix	31	53	0.87
Cytoplasmic	54	98	0.99
Transmembrane Helix	99	122	0.89
Non-Cytoplasmic	123	129	0.87
Transmembrane Helix	130	149	0.53
Cytoplasmic	150	324	0.56