YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111280999, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSIRRREAF TRHSLRSSRG VAHGQTIGCP PGAGHRKLPR RTVGALRHRH RLRYGPPRFS  60
   61 WPLCSLSDTT VEFARVDSEA RYAAHVPASL VSTFRRKRSH AMFSLIGTLL VGLVVGLLAR 120
  121 ALKPGDDKLG WIMTSLLGVA GSFLATYVGV AMGWYQQGEA AGWIASIVGA IVLLVIYGMV 180
  181 RSKS

Type	Start	End	Confidence
Non-Cytoplasmic	1	99	0.68
Transmembrane Helix	100	122	0.90
Cytoplasmic	123	128	0.70
Transmembrane Helix	129	151	0.90
Non-Cytoplasmic	152	159	0.60
Transmembrane Helix	160	180	0.95
Cytoplasmic	181	184	0.67