YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111619247, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	400	0.91
Transmembrane Helix	401	422	0.81
Non-Cytoplasmic	423	438	0.69
Transmembrane Helix	439	457	0.93
Cytoplasmic	458	469	0.78
Transmembrane Helix	470	489	0.90
Non-Cytoplasmic	490	496	0.81
Transmembrane Helix	497	517	0.93
Cytoplasmic	518	524	0.80
Transmembrane Helix	525	545	0.89
Non-Cytoplasmic	546	553	0.74
Transmembrane Helix	554	573	0.92
Cytoplasmic	574	585	0.85
Transmembrane Helix	586	606	0.91
Non-Cytoplasmic	607	617	0.79
Transmembrane Helix	618	641	0.87
Cytoplasmic	642	650	0.80
Transmembrane Helix	651	671	0.93
Non-Cytoplasmic	672	676	0.83
Transmembrane Helix	677	695	0.93
Cytoplasmic	696	698	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPTRAPASR NARSFQRQDG GARGLARFQV AVRLLHVAQR VALVDVDRHV AALHHREQVV  60
   61 RHGLGGFARG DVREQRLPRD VERSLGAQHA GRERRRRARG IAEGGHQAEG PQALQRLLPG 120
  121 VLAHRVVHHL HALAARDLLH ARREILGAVV DGMRRAVGER QLALLVAARR ADELQAQRLR 180
  181 PLAGDQPHAA RGRMEQHVVA RLQAFGRQRF LQQVLRRQAL EHHRRAGLEI YRVGQPAHAL 240
  241 RGQHTHLGIA AGRLARIRGA VAHGQVRHAR AHGLDDARAL HADRGRHRQR IQPRAVVHVD 300
  301 EIQAHRMVAD ADLAGAGLAH GHVGQVQFFG TAVLADLDGK AHAATPAMED TIKKKGKNRE 360
  361 RGPGQCGRAS GPRNGPTRGP ACILPRIGEA RRPVHFQAMT QRLSSGTAAL LVAAPLLWAG 420
  421 NAVVGRLVHP LISPVALNFI RWALAFLVLL PLAHGVLRRG SPLWPHWRRY AMLGLLGIGC 480
  481 YNALQYMALQ TSTPLNVTLV GSGLPVWMLA IGTLCFGARV TRAQATGALL SIAGVLVVLS 540
  541 RGEWAQLLAL RLVPGDLYMV LATISWAFYS WLLSRTTEPV GLRGDWAAFL MAQMVFGLAW 600
  601 SGAFAAGEWT LGHAHATWGW PLVAALAFIA LGPALLAYRC WGVGVQRAGP AVASFFINLT 660
  661 PLFAAVLSAL VLGETPHLYH GAAFALIVAG IVVSSRRG