YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	STX5_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPRKRYGSK NTDQGVYLGL SKTQVLSPAT AINSSSDIAP LPTPVALVPS PPDTMSCRDR  60
   61 TQEFLSACKS LQSRQNGIQT NKPALHATRQ CSEFTLMARR IGKDLSNTFA KLEKLTILAK 120
  121 RKSLFDDKAV EIEELTYIIK QDINSLNKQI AQLQDFVRAK GSQSGRHLQT HSNTIVVSLQ 180
  181 SKLASMSNDF KSVLEVRTEN LKQQRNRREQ FSRAPVSALP LAPNNLGGGP IVLGGESRAS 240
  241 RDVAIDMMDP RTSQQLQLID EQDSYIQSRA DTMQNIESTI VELGSIFQQL AHMVKEQEET 300
  301 IQRIDENVLG AQLDVEAAHS EILKYFQSVT SNRWLMVKIF LILIVFFIIF VVFLA

Type	Start	End	Confidence
Non-Cytoplasmic	1	333	0.55
Transmembrane Helix	334	354	0.95
Cytoplasmic	355	355	0.53