YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE39699
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	29	0.69
Transmembrane Helix	30	51	0.70
Cytoplasmic	52	59	0.77
Transmembrane Helix	60	80	0.94
Non-Cytoplasmic	81	89	0.82
Transmembrane Helix	90	109	0.95
Cytoplasmic	110	127	0.85
Transmembrane Helix	128	150	0.93
Non-Cytoplasmic	151	156	0.90
Transmembrane Helix	157	179	0.93
Cytoplasmic	180	215	0.98
Transmembrane Helix	216	239	0.89
Non-Cytoplasmic	240	252	0.88
Transmembrane Helix	253	276	0.88
Cytoplasmic	277	282	0.79
Transmembrane Helix	283	304	0.86
Non-Cytoplasmic	305	317	0.88
Transmembrane Helix	318	341	0.86
Cytoplasmic	342	356	0.83
Transmembrane Helix	357	378	0.91
Non-Cytoplasmic	379	383	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFITIAPQYY VDYWFTVNGT ATHYADSFQS AMGVVAQVPN LIVAIINVLN LIRGPLLYRV  60
   61 LAPLAFNSLL IVIILALVIF QQPSDQARNW FYIVSLIIVM AMNASNGLYQ NSFFGMAADF 120
  121 PAKYSNAVVI GTNICGTFTS VLAIVATLAF STQAETVALI YFGISLLILF VCLVSWWFCK 180
  181 KMDFYKYYVS KGNRLRAAQE QSSFDYRPYL ETIKYCWLQC ICVFLVYFVS LSVFPTVLAG 240
  241 FQPGYTVFPN DVYAGIAVFL NFNFFAAVGN VAATFVTFPG PRLLIVPCVI RLLFIPFFMF 300
  301 SNYLPHSRTM GVLFTNEWIF FFGNTLLAFT SGYFSSLGMM YTPRVCPPEY SKLAGQVSAL 360
  361 SLVLGITAGV SFTYAITAMV NNF