YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111071104
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVGSPPRIS KRPLHRRTPS SLEIVQEELP TMAEQDALGT APKSRSDPQL AVPGMASRLP  60
   61 SSDSADASSA ILDDALSSNQ PPLSTPGLSR SASFSNSSYQ DDSDFEDASF FPPVERLTMF 120
  121 DFVENLALNQ RIEKIQSSIA SQTQKIKDRA KNRGITKDRV VEEWRRRVPT EGEQLDKYRK 180
  181 RMRQSVDRLN KQWKESVTVT AKEKISFIAA VMNIFVSGYL VGLHPDFFPY WYTGQLFYFM 240
  241 PLRFITYHKK GYHYFLADLC YFVNILVVLS VWIFPQSKRL FIATYCLAFG NNAVAIIMWR 300
  301 NSLVFHSMDK VVSLFIHIMP CVTLHCLVHL LPDAMQQEKY PAIYNIRHSD PTSKHHYSLF 360
  361 QMMLWATLPY AVWQLSYHFL ITVRRRDAIK AGRPTSFTWL RKSYAKTWIG KIVLSLPDSL 420
  421 QESAFMVIQY LYAVLTMLPC PIWFWYRWAS GVFLMVVFIW SVYNGATFYI DVFGNRFQKE 480
  481 LEALKKDVAK WQASPGGGLT PFTPNEAGIE KQLGAIPPLE GSTGVKAADG EARERK

Type	Start	End	Confidence
Cytoplasmic	1	204	0.95
Transmembrane Helix	205	223	0.88
Non-Cytoplasmic	224	227	0.70
Transmembrane Helix	228	247	0.65
Cytoplasmic	248	253	0.67
Transmembrane Helix	254	274	0.94
Non-Cytoplasmic	275	280	0.66
Transmembrane Helix	281	301	0.92
Cytoplasmic	302	310	0.68
Transmembrane Helix	311	331	0.84
Non-Cytoplasmic	332	361	0.78
Transmembrane Helix	362	381	0.84
Cytoplasmic	382	424	0.80
Transmembrane Helix	425	445	0.72
Non-Cytoplasmic	446	450	0.54
Transmembrane Helix	451	473	0.82
Cytoplasmic	474	536	0.78