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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|111070562
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.70
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRQATNQY LSEKPNTRRS GKSPSRSPAR SPARSPARSP ASNGRKQQQK VQPKSYASEG  60
   61 VKDYDILNLP GSDWQLLGLL VVVAAVVRLF RIAQPSSVVF DEVHFGGFAT KYIKGKFFMD 120
  121 VHPPLAKLLI TLTGWLGGFD GSFDFKDIGM DYLEPGVPYV AMRLLPAICG VLTIPTMFLT 180
  181 LKAAGCRTTT AALGAGLVIF DNALVTQSRL ILLDSPLIIF TAITALAWTS FTNQHEQGPS 240
  241 KAFQPSWWFW LAATGVGLGA TVSVKWVGLF TIAWVGSLTL VQLWVLLGDT RNVTPRIWFK 300
  301 HFFARLFCLV VIPVTFYMAM FAIHFVCLVN PGDGDGFMSS EFQATLNSKG MQDVPADVAF 360
  361 GSRVSLRHWN TQGGYLHSHS HMYPGGSKQQ QITLYPHKDE NNIWIMENQT LPIMPEDYNG 420
  421 PNLTSPKAWD DMGPLFIEDG AVVKLYHITT DRRLHSHDVR APVTEADWQN EVSAYGYDGF 480
  481 EGDANDMFKI EIVKSHSDGA EAKKRVRTIQ TKFRLVHIMT GCVLFSHKVK LPDWGFEQQE 540
  541 VTCARGGTLP NSIWYIEGNI HPKMDASAEK VNYRNPGFFG KFWELQKVMW KTNAGLTESH 600
  601 AWDSRPPSWP ILGRGINFWG KHNRQIYLLG NPIIWWSTTA LIGLFIAIKG LAIIRWQRGF 660
  661 RDYDNVTFKR FDYEVGMSIL GWAFHYFPFY LMARQLFLHH YLPALYFAIL ALCQMYDFAS 720
  721 YRFNGLGLKK YPAIGQAVAV GFLALSITVF TLYAPLAYGN AWTKSQCNTV KLFSTWDWDC 780
  781 NNFLDSYEAY SAINTDVAAV ATPSSVAPPP PAPPVIPPGE QQQQQQQEPI VAKQEEIVSE 840
  841 QPAVSGPPQG IPKDLPVVSK EERIEYRDEN GRVLDDEEVA ALAGKVSFKT RYETRTRVVD 900
  901 AQGNEIYEGL VDAHGDDPAP PAEQAGVAPP HPDVDGRNPE TQVDSDAAEV SELPPTVEVK 960
  961 EDQQKERSVE LENQAGEAKP ASEAQAATAE 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle